No. words: 1440; after pruning: 1414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:561)  533  0.18 0.18 0.18  BG314551Ld12P081C03P081C091F1_049.ab1        1   562 (150)  C BG314551Ld12P081C03P081C091R1_049.ab1   (166)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C BG314551Ld12P081C03P081C091R1_049.ab1   728 
  525    BG314551Ld12P081C03P081C091F1_049.ab1   359 
  541  C BG314551Ld12P081C03P081C091R1_049.ab1   188 
  553    BG314551Ld12P081C03P081C091F1_049.ab1   387 
  581  C BG314551Ld12P081C03P081C091R1_049.ab1   148 
  605    BG314551Ld12P081C03P081C091F1_049.ab1   439 
Contig length: old 878, new 878

Contig length: old 878, new 878
New start: 0