No. words: 1722; after pruning: 1696


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:703)  687  0.00 0.00 0.00  BG314551Ld13P081C03P081C091F1_083.ab1        1   704 (144)  C BG314551Ld13P081C03P081C091R1_083.ab1   (170)   704     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C BG314551Ld13P081C03P081C091R1_083.ab1   874 
  247    BG314551Ld13P081C03P081C091F1_083.ab1    77 
  251  C BG314551Ld13P081C03P081C091R1_083.ab1   624 
  455    BG314551Ld13P081C03P081C091F1_083.ab1   285 
  523  C BG314551Ld13P081C03P081C091R1_083.ab1   352 
  527    BG314551Ld13P081C03P081C091F1_083.ab1   357 
  547  C BG314551Ld13P081C03P081C091R1_083.ab1   328 
  551    BG314551Ld13P081C03P081C091F1_083.ab1   381 
  555  C BG314551Ld13P081C03P081C091R1_083.ab1   320 
  563    BG314551Ld13P081C03P081C091F1_083.ab1   393 
  583  C BG314551Ld13P081C03P081C091R1_083.ab1   292 
  587    BG314551Ld13P081C03P081C091F1_083.ab1   417 
  739  C BG314551Ld13P081C03P081C091R1_083.ab1   136 
  747    BG314551Ld13P081C03P081C091F1_083.ab1   577 
  755  C BG314551Ld13P081C03P081C091R1_083.ab1   120 
  759    BG314551Ld13P081C03P081C091F1_083.ab1   589 
  795  C BG314551Ld13P081C03P081C091R1_083.ab1    80 
  799    BG314551Ld13P081C03P081C091F1_083.ab1   629 
  815  C BG314551Ld13P081C03P081C091R1_083.ab1    60 
  819    BG314551Ld13P081C03P081C091F1_083.ab1   649 
Contig length: old 1018, new 1018

Contig length: old 1018, new 1018
New start: 0