No. words: 1488; after pruning: 1462


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:702)  676  0.28 0.14 0.00  BG314551Tu02P081C03P081C091F1_090.ab1        1   703 (39)  C BG314551Tu02P081C03P081C091R1_090.ab1   (42)   704     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  344 nodes

 174 str. conn. components

Path
    1  C BG314551Tu02P081C03P081C091R1_090.ab1   746 
   47    BG314551Tu02P081C03P081C091F1_090.ab1     5 
  303  C BG314551Tu02P081C03P081C091R1_090.ab1   443 
  311    BG314551Tu02P081C03P081C091F1_090.ab1   269 
  343  C BG314551Tu02P081C03P081C091R1_090.ab1   403 
  347    BG314551Tu02P081C03P081C091F1_090.ab1   305 
  359  C BG314551Tu02P081C03P081C091R1_090.ab1   387 
  379    BG314551Tu02P081C03P081C091F1_090.ab1   337 
  423  C BG314551Tu02P081C03P081C091R1_090.ab1   323 
  435    BG314551Tu02P081C03P081C091F1_090.ab1   393 
  451  C BG314551Tu02P081C03P081C091R1_090.ab1   295 
  559    BG314551Tu02P081C03P081C091F1_090.ab1   517 
  563  C BG314551Tu02P081C03P081C091R1_090.ab1   183 
  711    BG314551Tu02P081C03P081C091F1_090.ab1   669 
Contig length: old 785, new 784

Contig length: old 784, new 784
New start: 0