No. words: 1034; after pruning: 1008


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.4 (1,1:355)  347  0.00 0.28 0.00  BG604501Ld04P027H04P027H101F1_045.ab1        1   353 (156)  C BG604501Ld04P027H04P027H101R1_045.ab1   (168)   357     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C BG604501Ld04P027H04P027H101R1_045.ab1   525 
  214    BG604501Ld04P027H04P027H101F1_045.ab1    45 
  222  C BG604501Ld04P027H04P027H101R1_045.ab1   304 
  442    BG604501Ld04P027H04P027H101F1_045.ab1   273 
  470  C BG604501Ld04P027H04P027H101R1_045.ab1    56 
  474    BG604501Ld04P027H04P027H101F1_045.ab1   305 
Contig length: old 678, new 678

Contig length: old 678, new 678
New start: 0