No. words: 1038; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:347)  346  0.00 0.00 0.00  BG604501Ld07P027H04P027H101F1_039.ab1        1   348 (158)  C BG604501Ld07P027H04P027H101R1_039.ab1   (184)   348     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BG604501Ld07P027H04P027H101R1_039.ab1   532 
  456    BG604501Ld07P027H04P027H101F1_039.ab1   272 
  460  C BG604501Ld07P027H04P027H101R1_039.ab1    73 
  472    BG604501Ld07P027H04P027H101F1_039.ab1   288 
  476  C BG604501Ld07P027H04P027H101R1_039.ab1    57 
  484    BG604501Ld07P027H04P027H101F1_039.ab1   300 
Contig length: old 690, new 690

Contig length: old 690, new 690
New start: 0