No. words: 1329; after pruning: 1303


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.4 (1,1:509)  491  0.20 0.00 0.20  BG604577Ld01P027A05P027A111F1_048.ab1        2   510 (142)  C BG604577Ld01P027A05P027A111R1_048.ab1   (169)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C BG604577Ld01P027A05P027A111R1_048.ab1   677 
  345    BG604577Ld01P027A05P027A111F1_048.ab1   177 
  357  C BG604577Ld01P027A05P027A111R1_048.ab1   321 
  361    BG604577Ld01P027A05P027A111F1_048.ab1   193 
  376  C BG604577Ld01P027A05P027A111R1_048.ab1   302 
  516    BG604577Ld01P027A05P027A111F1_048.ab1   348 
  520  C BG604577Ld01P027A05P027A111R1_048.ab1   158 
  532    BG604577Ld01P027A05P027A111F1_048.ab1   364 
  536  C BG604577Ld01P027A05P027A111R1_048.ab1   142 
  544    BG604577Ld01P027A05P027A111F1_048.ab1   376 
  560  C BG604577Ld01P027A05P027A111R1_048.ab1   118 
  568    BG604577Ld01P027A05P027A111F1_048.ab1   400 
  584  C BG604577Ld01P027A05P027A111R1_048.ab1    94 
  592    BG604577Ld01P027A05P027A111F1_048.ab1   424 
  656  C BG604577Ld01P027A05P027A111R1_048.ab1    22 
  660    BG604577Ld01P027A05P027A111F1_048.ab1   492 
Contig length: old 819, new 820

Contig length: old 820, new 820
New start: 0