No. words: 1342; after pruning: 1316


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.4 (1,1:511)  491  0.39 0.00 0.20  BG604577Ld03P027A05P027A111F1_044.ab1        2   512 (178)  C BG604577Ld03P027A05P027A111R1_044.ab1   (142)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C BG604577Ld03P027A05P027A111R1_044.ab1   652 
  226    BG604577Ld03P027A05P027A111F1_044.ab1    85 
  234  C BG604577Ld03P027A05P027A111R1_044.ab1   419 
  282    BG604577Ld03P027A05P027A111F1_044.ab1   141 
  294  C BG604577Ld03P027A05P027A111R1_044.ab1   359 
  306    BG604577Ld03P027A05P027A111F1_044.ab1   165 
  322  C BG604577Ld03P027A05P027A111R1_044.ab1   331 
  334    BG604577Ld03P027A05P027A111F1_044.ab1   193 
  362  C BG604577Ld03P027A05P027A111R1_044.ab1   291 
  406    BG604577Ld03P027A05P027A111F1_044.ab1   265 
  418  C BG604577Ld03P027A05P027A111R1_044.ab1   235 
  502    BG604577Ld03P027A05P027A111F1_044.ab1   361 
  510  C BG604577Ld03P027A05P027A111R1_044.ab1   143 
  522    BG604577Ld03P027A05P027A111F1_044.ab1   381 
  538  C BG604577Ld03P027A05P027A111R1_044.ab1   115 
  542    BG604577Ld03P027A05P027A111F1_044.ab1   401 
  566  C BG604577Ld03P027A05P027A111R1_044.ab1    87 
  570    BG604577Ld03P027A05P027A111F1_044.ab1   429 
Contig length: old 830, new 831

Contig length: old 831, new 831
New start: 0