No. words: 1340; after pruning: 1314


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:511)  495  0.00 0.20 0.20  BG604577Ld05P027A05P027A111F1_040.ab1        1   512 (181)  C BG604577Ld05P027A05P027A111R1_040.ab1   (135)   512     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BG604577Ld05P027A05P027A111R1_040.ab1   647 
  329    BG604577Ld05P027A05P027A111F1_040.ab1   193 
  353  C BG604577Ld05P027A05P027A111R1_040.ab1   295 
  417    BG604577Ld05P027A05P027A111F1_040.ab1   281 
  445  C BG604577Ld05P027A05P027A111R1_040.ab1   203 
  485    BG604577Ld05P027A05P027A111F1_040.ab1   349 
  589  C BG604577Ld05P027A05P027A111R1_040.ab1    59 
  593    BG604577Ld05P027A05P027A111F1_040.ab1   457 
Contig length: old 828, new 829

Contig length: old 829, new 829
New start: 0