No. words: 1348; after pruning: 1322


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.7 (1,1:506)  485  0.20 0.00 0.39  BG604577Ld06P027A05P027A111F1_038.ab1        2   508 (182)  C BG604577Ld06P027A05P027A111R1_038.ab1   (153)   505     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C BG604577Ld06P027A05P027A111R1_038.ab1   658 
  209    BG604577Ld06P027A05P027A111F1_038.ab1    57 
  217  C BG604577Ld06P027A05P027A111R1_038.ab1   442 
  257    BG604577Ld06P027A05P027A111F1_038.ab1   105 
  261  C BG604577Ld06P027A05P027A111R1_038.ab1   398 
  341    BG604577Ld06P027A05P027A111F1_038.ab1   189 
  350  C BG604577Ld06P027A05P027A111R1_038.ab1   309 
  506    BG604577Ld06P027A05P027A111F1_038.ab1   354 
  510  C BG604577Ld06P027A05P027A111R1_038.ab1   149 
  514    BG604577Ld06P027A05P027A111F1_038.ab1   362 
  518  C BG604577Ld06P027A05P027A111R1_038.ab1   141 
  530    BG604577Ld06P027A05P027A111F1_038.ab1   378 
  534  C BG604577Ld06P027A05P027A111R1_038.ab1   125 
  542    BG604577Ld06P027A05P027A111F1_038.ab1   390 
  546  C BG604577Ld06P027A05P027A111R1_038.ab1   113 
  554    BG604577Ld06P027A05P027A111F1_038.ab1   402 
  570  C BG604577Ld06P027A05P027A111R1_038.ab1    89 
  586    BG604577Ld06P027A05P027A111F1_038.ab1   434 
  594  C BG604577Ld06P027A05P027A111R1_038.ab1    65 
  598    BG604577Ld06P027A05P027A111F1_038.ab1   446 
  602  C BG604577Ld06P027A05P027A111R1_038.ab1    57 
  606    BG604577Ld06P027A05P027A111F1_038.ab1   454 
  610  C BG604577Ld06P027A05P027A111R1_038.ab1    49 
  626    BG604577Ld06P027A05P027A111F1_038.ab1   474 
  638  C BG604577Ld06P027A05P027A111R1_038.ab1    21 
  642    BG604577Ld06P027A05P027A111F1_038.ab1   490 
Contig length: old 841, new 842

Contig length: old 842, new 842
New start: 0