No. words: 1329; after pruning: 1303


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.8 (1,1:510)  496  0.20 0.00 0.00  BG604577Ld07P027A05P027A111F1_036.ab1        3   511 (140)  C BG604577Ld07P027A05P027A111R1_036.ab1   (169)   509     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C BG604577Ld07P027A05P027A111R1_036.ab1   678 
  365    BG604577Ld07P027A05P027A111F1_036.ab1   198 
  373  C BG604577Ld07P027A05P027A111R1_036.ab1   306 
  573    BG604577Ld07P027A05P027A111F1_036.ab1   406 
  577  C BG604577Ld07P027A05P027A111R1_036.ab1   102 
  621    BG604577Ld07P027A05P027A111F1_036.ab1   454 
  629  C BG604577Ld07P027A05P027A111R1_036.ab1    50 
  663    BG604577Ld07P027A05P027A111F1_036.ab1   496 
  671  C BG604577Ld07P027A05P027A111R1_036.ab1     8 
  675    BG604577Ld07P027A05P027A111F1_036.ab1   508 
Contig length: old 818, new 818

Contig length: old 818, new 818
New start: 0