No. words: 1337; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.0 (1,1:508)  496  0.20 0.00 0.00  BG604577Ld10P027A05P027A111F1_061.ab1        2   509 (151)  C BG604577Ld10P027A05P027A111R1_061.ab1   (169)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BG604577Ld10P027A05P027A111R1_061.ab1   677 
  305    BG604577Ld10P027A05P027A111F1_061.ab1   137 
  313  C BG604577Ld10P027A05P027A111R1_061.ab1   365 
  361    BG604577Ld10P027A05P027A111F1_061.ab1   193 
  375  C BG604577Ld10P027A05P027A111R1_061.ab1   303 
  519    BG604577Ld10P027A05P027A111F1_061.ab1   351 
  523  C BG604577Ld10P027A05P027A111R1_061.ab1   155 
  531    BG604577Ld10P027A05P027A111F1_061.ab1   363 
  535  C BG604577Ld10P027A05P027A111R1_061.ab1   143 
  551    BG604577Ld10P027A05P027A111F1_061.ab1   383 
  563  C BG604577Ld10P027A05P027A111R1_061.ab1   115 
  571    BG604577Ld10P027A05P027A111F1_061.ab1   403 
  599  C BG604577Ld10P027A05P027A111R1_061.ab1    79 
  603    BG604577Ld10P027A05P027A111F1_061.ab1   435 
Contig length: old 828, new 828

Contig length: old 828, new 828
New start: 0