No. words: 3324; after pruning: 3272


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:1397)  197  0.00 0.00 0.00  BG604919At01P081E03P081E091F1_090.ab1      587   787 (0)  C BG604919At01P081E03P081E091R1_090.ab1   (0)   812   612 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 3:  102 nodes

 53 str. conn. components

Path
    1    BG604919At01P081E03P081E091F1_090.ab1     1 
  682  C BG604919At01P081E03P081E091R1_090.ab1   717 
  686    BG604919At01P081E03P081E091F1_090.ab1   686 
  710  C BG604919At01P081E03P081E091R1_090.ab1   689 
  718    BG604919At01P081E03P081E091F1_090.ab1   718 
  730  C BG604919At01P081E03P081E091R1_090.ab1   669 
  742    BG604919At01P081E03P081E091F1_090.ab1   742 
  746  C BG604919At01P081E03P081E091R1_090.ab1   653 
Contig length: old 1398, new 1398

Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BG604919At01P081E03P081E091R1_042.ab1     1 
Contig length: old 863, new 863

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BG604919At01P081E03P081E091F1_042.ab1     1 
Contig length: old 862, new 862

Contig length: old 1398, new 1398
New start: 0