No. words: 2373; after pruning: 2308


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      5

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:-54)  425  0.68 0.00 0.00  BG606095As02P081F03P081F091F1_085.ab1        1   442 (0)    BG606095As02P081F03P081F091F1_071.ab1       55   496 (129) *
Merge:(0)    0    0.0 5.6 (1,1:-106)  259  1.08 0.00 0.00  BG606095As02P081F03P081F091R1_085.ab1        1   277 (10)    BG606095As02P081F03P081F091R1_071.ab1      107   383 (0) *
Merge:(0)    2    0.0 4.9 (2,1:941)  249  1.52 0.00 0.00  BG606095As02P081F03P081F091F1_071.ab1      361   623 (2)  C BG606095As02P081F03P081F091R1_008.ab1   (0)   636   374 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 2       1        0

Offset
  0       4 

Pass 4
             Gap  Score    
Merge:(0)    0    0.0 6.2 (3,2:933)  273  0.35 0.00 0.00  BG606095As02P081F03P081F091R1_008.ab1        1   285 (351)    BG606095As02P081F03P081F091R1_071.ab1       99   383 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    5      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       2 

Read equivalence class histogram:
    5    1

Chimera merges: 


Contig 1:  794 nodes

 331 str. conn. components

Path
    1    BG606095As02P081F03P081F091R1_071.ab1     1 
  105    BG606095As02P081F03P081F091R1_008.ab1     7 
  154    BG606095As02P081F03P081F091R1_071.ab1   154 
  162    BG606095As02P081F03P081F091R1_008.ab1    64 
  592  C BG606095As02P081F03P081F091F1_071.ab1   503 
  596    BG606095As02P081F03P081F091R1_008.ab1   498 
  631  C BG606095As02P081F03P081F091F1_071.ab1   464 
  635    BG606095As02P081F03P081F091R1_008.ab1   537 
  638  C BG606095As02P081F03P081F091F1_085.ab1   403 
  640  C BG606095As02P081F03P081F091F1_071.ab1   455 
  652  C BG606095As02P081F03P081F091F1_085.ab1   389 
  654    BG606095As02P081F03P081F091R1_008.ab1   556 
  663  C BG606095As02P081F03P081F091F1_071.ab1   432 
  667    BG606095As02P081F03P081F091R1_008.ab1   569 
  683  C BG606095As02P081F03P081F091F1_071.ab1   412 
  734  C BG606095As02P081F03P081F091F1_085.ab1   307 
  750  C BG606095As02P081F03P081F091F1_071.ab1   345 
  790  C BG606095As02P081F03P081F091F1_085.ab1   251 
  794  C BG606095As02P081F03P081F091F1_071.ab1   301 
  806  C BG606095As02P081F03P081F091F1_085.ab1   235 
  818  C BG606095As02P081F03P081F091F1_071.ab1   277 
  822  C BG606095As02P081F03P081F091F1_085.ab1   219 
  826  C BG606095As02P081F03P081F091F1_071.ab1   269 
  838  C BG606095As02P081F03P081F091F1_085.ab1   203 
  842  C BG606095As02P081F03P081F091F1_071.ab1   253 
  846  C BG606095As02P081F03P081F091F1_085.ab1   195 
  854  C BG606095As02P081F03P081F091F1_071.ab1   241 
  866  C BG606095As02P081F03P081F091F1_085.ab1   175 
  878  C BG606095As02P081F03P081F091F1_071.ab1   217 
  922  C BG606095As02P081F03P081F091F1_085.ab1   119 
  926  C BG606095As02P081F03P081F091F1_071.ab1   169 
  942  C BG606095As02P081F03P081F091F1_085.ab1    99 
  946  C BG606095As02P081F03P081F091F1_071.ab1   149 
  986  C BG606095As02P081F03P081F091F1_085.ab1    55 
  994  C BG606095As02P081F03P081F091F1_071.ab1   101 
 1025  C BG606095As02P081F03P081F091F1_085.ab1    16 
 1029  C BG606095As02P081F03P081F091F1_071.ab1    66 
Contig length: old 1094, new 1094

Contig length: old 1094, new 1094
New start: 0