No. words: 1969; after pruning: 1917


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   56    0.0 1.2 (1,1:-29)  253  2.17 0.00 0.00  BG606095At01P081F03P081F091R1_006.ab1        5   281 (427)    BG606095At01P081F03P081F091R1_083.ab1       34   310 (56) *
Merge:(0)    1    0.0 0.1 (1,1:-58)  346  4.85 0.00 0.00  BG606095At01P081F03P081F091F1_083.ab1        1   412 (12)    BG606095At01P081F03P081F091F1_069.ab1       59   470 (1) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 1       1        0
56       1        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  158 nodes

 81 str. conn. components

Path
    1    BG606095At01P081F03P081F091F1_069.ab1     1 
   67    BG606095At01P081F03P081F091F1_083.ab1     9 
   76    BG606095At01P081F03P081F091F1_069.ab1    76 
  116    BG606095At01P081F03P081F091F1_083.ab1    58 
  120    BG606095At01P081F03P081F091F1_069.ab1   120 
  132    BG606095At01P081F03P081F091F1_083.ab1    74 
  160    BG606095At01P081F03P081F091F1_069.ab1   160 
  164    BG606095At01P081F03P081F091F1_083.ab1   106 
  176    BG606095At01P081F03P081F091F1_069.ab1   176 
  184    BG606095At01P081F03P081F091F1_083.ab1   126 
  200    BG606095At01P081F03P081F091F1_069.ab1   200 
  212    BG606095At01P081F03P081F091F1_083.ab1   154 
  228    BG606095At01P081F03P081F091F1_069.ab1   228 
  244    BG606095At01P081F03P081F091F1_083.ab1   186 
  252    BG606095At01P081F03P081F091F1_069.ab1   252 
  256    BG606095At01P081F03P081F091F1_083.ab1   198 
  264    BG606095At01P081F03P081F091F1_069.ab1   264 
  272    BG606095At01P081F03P081F091F1_083.ab1   214 
  284    BG606095At01P081F03P081F091F1_069.ab1   284 
  288    BG606095At01P081F03P081F091F1_083.ab1   230 
  381    BG606095At01P081F03P081F091F1_069.ab1   381 
  389    BG606095At01P081F03P081F091F1_083.ab1   331 
  456    BG606095At01P081F03P081F091F1_069.ab1   456 
  464    BG606095At01P081F03P081F091F1_083.ab1   406 
Contig length: old 482, new 482

Contig 1:  128 nodes

 66 str. conn. components

Path
    1    BG606095At01P081F03P081F091R1_083.ab1     1 
   37    BG606095At01P081F03P081F091R1_006.ab1     8 
Contig length: old 737, new 737

Contig length: old 482, new 482
New start: 0 
S Change at: 402; seg lengths: entry 1, contig 1

Contig length: old 737, new 737
New start: 0