No. words: 2373; after pruning: 2308 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 5 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Merge:(0) 0 0.0 1.7 (1,1:1029) 168 4.10 0.00 0.00 BG606095At02P081F03P081F091R1_004.ab1 466 660 (0) C BG606095At02P081F03P081F091F1_067.ab1 (0) 565 371 * Fail: (1) 361 -4.8 0.0 (2,1:1020) 61 5.48 0.00 0.00 BG606095At02P081F03P081F091R1_004.ab1 588 660 (0) C BG606095At02P081F03P081F091F1_096.ab1 (1) 434 362 * Worst pair: offset 0 LLR breakdown: discreps: -13.5 (<20 part: -6.9 (#=18), >20:-6.6 (#=2); in HQ: -13.5, out HQ 0.0), match: 9.2 trail: -0.6 total: -4.9 367 4.37 0.00 0.23 BG606095At02P081F03P081F091F1_067.ab1 9 443 (122) BG606095At02P081F03P081F091F1_096.ab1 1 434 (1) * Pass: 3 #reads #contigs (not counting singlets) 1 3 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 1 0 -4.8 0 1 Gap # merges # failures size 0 1 0 361 0 1 Offset 0 2 Pass 4 Gap Score Merge:(0) 1 -4.8 0.0 (2,1:1020) 61 5.48 0.00 0.00 BG606095At02P081F03P081F091R1_004.ab1 588 660 (0) C BG606095At02P081F03P081F091F1_096.ab1 (1) 434 362 * Worst pair: offset 0 LLR breakdown: discreps: -13.5 (<20 part: -6.9 (#=18), >20:-6.6 (#=2); in HQ: -13.5, out HQ 0.0), match: 9.2 trail: -0.6 total: -4.9 367 4.37 0.00 0.23 BG606095At02P081F03P081F091F1_067.ab1 9 443 (122) BG606095At02P081F03P081F091F1_096.ab1 1 434 (1) * 0 -11 405 1018 203 E 203- 405 Fail: (1) 203 -0.2 -0.2 (3,1:11) 182 2.46 0.00 0.00 BG606095At02P081F03P081F091R1_004.ab1 12 214 (446) BG606095At02P081F03P081F091R1_096.ab1 1 203 (203) * Merge:(0) 93 -2.4 -2.4 (1,1:-107) 103 0.93 0.00 0.00 BG606095At02P081F03P081F091R1_096.ab1 1 107 (299) BG606095At02P081F03P081F091R1_067.ab1 108 214 (93) * Pass: 4 #reads #contigs (not counting singlets) 2 1 3 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score -0.2 0 1 -2.4 1 0 -4.8 1 0 Gap # merges # failures size 1 1 0 93 1 0 203 0 1 Offset 0 3 1 1 Read equivalence class histogram: 1 3 2 1 Chimera merges: Contig 2: 256 nodes 129 str. conn. components Path 1 BG606095At02P081F03P081F091F1_067.ab1 1 27 BG606095At02P081F03P081F091F1_096.ab1 19 31 BG606095At02P081F03P081F091F1_067.ab1 31 161 BG606095At02P081F03P081F091F1_096.ab1 152 165 BG606095At02P081F03P081F091F1_067.ab1 165 173 BG606095At02P081F03P081F091F1_096.ab1 164 177 BG606095At02P081F03P081F091F1_067.ab1 177 189 BG606095At02P081F03P081F091F1_096.ab1 180 197 BG606095At02P081F03P081F091F1_067.ab1 197 201 BG606095At02P081F03P081F091F1_096.ab1 192 213 BG606095At02P081F03P081F091F1_067.ab1 213 217 BG606095At02P081F03P081F091F1_096.ab1 208 221 BG606095At02P081F03P081F091F1_067.ab1 221 233 BG606095At02P081F03P081F091F1_096.ab1 224 241 BG606095At02P081F03P081F091F1_067.ab1 241 265 BG606095At02P081F03P081F091F1_096.ab1 256 281 BG606095At02P081F03P081F091F1_067.ab1 281 330 BG606095At02P081F03P081F091F1_096.ab1 321 357 BG606095At02P081F03P081F091F1_067.ab1 357 379 BG606095At02P081F03P081F091F1_096.ab1 370 390 BG606095At02P081F03P081F091F1_067.ab1 390 418 C BG606095At02P081F03P081F091R1_004.ab1 613 422 BG606095At02P081F03P081F091F1_067.ab1 422 426 C BG606095At02P081F03P081F091R1_004.ab1 605 Contig length: old 1030, new 1030 Contig 1: 52 nodes 28 str. conn. components Path 1 BG606095At02P081F03P081F091R1_067.ab1 1 209 BG606095At02P081F03P081F091R1_096.ab1 102 Contig length: old 513, new 513 Contig length: old 1030, new 1030 New start: 0 S Change at: 401; seg lengths: entry 1, contig 1 Contig length: old 513, new 513 New start: 0