No. words: 1591; after pruning: 1565


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:1102)  463  0.82 0.00 0.00  BG606095Ld14P081F03P081F091F1_002.ab1      396   883 (0)  C BG606095Ld14P081F03P081F091R1_002.ab1   (0)   708   221 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1    BG606095Ld14P081F03P081F091F1_002.ab1     1 
  527  C BG606095Ld14P081F03P081F091R1_002.ab1   577 
  531    BG606095Ld14P081F03P081F091F1_002.ab1   531 
  543  C BG606095Ld14P081F03P081F091R1_002.ab1   561 
  551    BG606095Ld14P081F03P081F091F1_002.ab1   551 
  571  C BG606095Ld14P081F03P081F091R1_002.ab1   533 
  579    BG606095Ld14P081F03P081F091F1_002.ab1   579 
  583  C BG606095Ld14P081F03P081F091R1_002.ab1   521 
  655    BG606095Ld14P081F03P081F091F1_002.ab1   655 
  663  C BG606095Ld14P081F03P081F091R1_002.ab1   441 
Contig length: old 1103, new 1103

Contig length: old 1103, new 1103
New start: 0