No. words: 1712; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:1108)  585  0.00 0.17 0.17  BG606095Ld17P081F03P081F091F1_027.ab1      273   875 (0)  C BG606095Ld17P081F03P081F091R1_027.ab1   (0)   837   235 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    BG606095Ld17P081F03P081F091F1_027.ab1     1 
  484  C BG606095Ld17P081F03P081F091R1_027.ab1   626 
  488    BG606095Ld17P081F03P081F091F1_027.ab1   488 
  552  C BG606095Ld17P081F03P081F091R1_027.ab1   558 
  556    BG606095Ld17P081F03P081F091F1_027.ab1   556 
  600  C BG606095Ld17P081F03P081F091R1_027.ab1   510 
  656    BG606095Ld17P081F03P081F091F1_027.ab1   656 
  664  C BG606095Ld17P081F03P081F091R1_027.ab1   446 
Contig length: old 1109, new 1109

Contig length: old 1109, new 1109
New start: 0