No. words: 1527; after pruning: 1501


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:1095)  421  0.23 0.00 0.00  BG606095Ld22P081F03P081F091F1_064.ab1      373   803 (0)  C BG606095Ld22P081F03P081F091R1_064.ab1   (0)   724   294 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1    BG606095Ld22P081F03P081F091F1_064.ab1     1 
  560  C BG606095Ld22P081F03P081F091R1_064.ab1   537 
  568    BG606095Ld22P081F03P081F091F1_064.ab1   568 
  572  C BG606095Ld22P081F03P081F091R1_064.ab1   525 
Contig length: old 1096, new 1096

Contig length: old 1096, new 1096
New start: 0