No. words: 1500; after pruning: 1474


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:981)  511  0.00 0.00 0.00  BG606095Ld24P081F03P081F091F1_060.ab1      296   813 (0)  C BG606095Ld24P081F03P081F091R1_060.ab1   (0)   687   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1    BG606095Ld24P081F03P081F091F1_060.ab1     1 
  371  C BG606095Ld24P081F03P081F091R1_060.ab1   612 
  375    BG606095Ld24P081F03P081F091F1_060.ab1   375 
  523  C BG606095Ld24P081F03P081F091R1_060.ab1   460 
  527    BG606095Ld24P081F03P081F091F1_060.ab1   527 
  543  C BG606095Ld24P081F03P081F091R1_060.ab1   440 
  563    BG606095Ld24P081F03P081F091F1_060.ab1   563 
  571  C BG606095Ld24P081F03P081F091R1_060.ab1   412 
  591    BG606095Ld24P081F03P081F091F1_060.ab1   591 
  595  C BG606095Ld24P081F03P081F091R1_060.ab1   388 
Contig length: old 982, new 982

Contig length: old 982, new 982
New start: 0