No. words: 949; after pruning: 923


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.1 (1,1:559)  343  2.33 0.00 0.00  BG607141Td06P059H09P003C091F1_069.ab1      135   521 (2)  C BG607141Td06P059H09P003C091R1_069.ab1   (0)   426    40 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1    BG607141Td06P059H09P003C091F1_069.ab1     1 
  184  C BG607141Td06P059H09P003C091R1_069.ab1   377 
  194    BG607141Td06P059H09P003C091F1_069.ab1   194 
  240  C BG607141Td06P059H09P003C091R1_069.ab1   321 
  248    BG607141Td06P059H09P003C091F1_069.ab1   248 
  252  C BG607141Td06P059H09P003C091R1_069.ab1   309 
  256    BG607141Td06P059H09P003C091F1_069.ab1   256 
  264  C BG607141Td06P059H09P003C091R1_069.ab1   297 
  272    BG607141Td06P059H09P003C091F1_069.ab1   272 
  280  C BG607141Td06P059H09P003C091R1_069.ab1   281 
  292    BG607141Td06P059H09P003C091F1_069.ab1   292 
  296  C BG607141Td06P059H09P003C091R1_069.ab1   265 
  300    BG607141Td06P059H09P003C091F1_069.ab1   300 
  308  C BG607141Td06P059H09P003C091R1_069.ab1   253 
  316    BG607141Td06P059H09P003C091F1_069.ab1   316 
  377  C BG607141Td06P059H09P003C091R1_069.ab1   184 
  385    BG607141Td06P059H09P003C091F1_069.ab1   385 
  389  C BG607141Td06P059H09P003C091R1_069.ab1   172 
  401    BG607141Td06P059H09P003C091F1_069.ab1   401 
  422  C BG607141Td06P059H09P003C091R1_069.ab1   139 
  446    BG607141Td06P059H09P003C091F1_069.ab1   446 
  450  C BG607141Td06P059H09P003C091R1_069.ab1   111 
  458    BG607141Td06P059H09P003C091F1_069.ab1   458 
  474  C BG607141Td06P059H09P003C091R1_069.ab1    87 
  482    BG607141Td06P059H09P003C091F1_069.ab1   482 
  486  C BG607141Td06P059H09P003C091R1_069.ab1    75 
Contig length: old 560, new 560

Contig length: old 560, new 560
New start: 0 
S Change at: 209; seg lengths: entry 1, contig 1