No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:539)  423  1.89 0.00 0.00  BG607141Td09P059H09P003C091F1_080.ab1        1   475 (0)  C BG607141Td09P059H09P003C091R1_080.ab1   (6)   540    66 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C BG607141Td09P059H09P003C091R1_080.ab1   546 
   10    BG607141Td09P059H09P003C091F1_080.ab1     4 
   26  C BG607141Td09P059H09P003C091R1_080.ab1   521 
   36    BG607141Td09P059H09P003C091F1_080.ab1    30 
   64  C BG607141Td09P059H09P003C091R1_080.ab1   483 
   72    BG607141Td09P059H09P003C091F1_080.ab1    66 
   80  C BG607141Td09P059H09P003C091R1_080.ab1   467 
   84    BG607141Td09P059H09P003C091F1_080.ab1    78 
   88  C BG607141Td09P059H09P003C091R1_080.ab1   459 
   92    BG607141Td09P059H09P003C091F1_080.ab1    86 
  116  C BG607141Td09P059H09P003C091R1_080.ab1   431 
  131    BG607141Td09P059H09P003C091F1_080.ab1   125 
  143  C BG607141Td09P059H09P003C091R1_080.ab1   404 
  174    BG607141Td09P059H09P003C091F1_080.ab1   168 
  186  C BG607141Td09P059H09P003C091R1_080.ab1   361 
  233    BG607141Td09P059H09P003C091F1_080.ab1   227 
  237  C BG607141Td09P059H09P003C091R1_080.ab1   310 
  251    BG607141Td09P059H09P003C091F1_080.ab1   245 
  255  C BG607141Td09P059H09P003C091R1_080.ab1   292 
  291    BG607141Td09P059H09P003C091F1_080.ab1   285 
  295  C BG607141Td09P059H09P003C091R1_080.ab1   252 
  323    BG607141Td09P059H09P003C091F1_080.ab1   317 
  347  C BG607141Td09P059H09P003C091R1_080.ab1   200 
  387    BG607141Td09P059H09P003C091F1_080.ab1   381 
  395  C BG607141Td09P059H09P003C091R1_080.ab1   152 
  439    BG607141Td09P059H09P003C091F1_080.ab1   433 
  448  C BG607141Td09P059H09P003C091R1_080.ab1    99 
Contig length: old 546, new 546

Contig length: old 546, new 546
New start: 0