No. words: 972; after pruning: 946


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:428)  422  0.00 0.23 0.00  BG607279At02P081G03P081G091F1_023.ab1        1   429 (60)  C BG607279At02P081G03P081G091R1_023.ab1   (53)   430     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C BG607279At02P081G03P081G091R1_023.ab1   483 
  398    BG607279At02P081G03P081G091F1_023.ab1   344 
  414  C BG607279At02P081G03P081G091R1_023.ab1    70 
  430    BG607279At02P081G03P081G091F1_023.ab1   376 
  438  C BG607279At02P081G03P081G091R1_023.ab1    46 
  450    BG607279At02P081G03P081G091F1_023.ab1   396 
  458  C BG607279At02P081G03P081G091R1_023.ab1    26 
  462    BG607279At02P081G03P081G091F1_023.ab1   408 
Contig length: old 543, new 543

Contig length: old 543, new 543
New start: 0