No. words: 1211; after pruning: 1185


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:435)  417  0.92 0.23 0.00  BG607279Ld17P081G03P081G091F1_084.ab1        1   436 (195)  C BG607279Ld17P081G03P081G091R1_084.ab1   (143)   437     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C BG607279Ld17P081G03P081G091R1_084.ab1   580 
  319    BG607279Ld17P081G03P081G091F1_084.ab1   175 
  323  C BG607279Ld17P081G03P081G091R1_084.ab1   258 
  443    BG607279Ld17P081G03P081G091F1_084.ab1   299 
  447  C BG607279Ld17P081G03P081G091R1_084.ab1   134 
  451    BG607279Ld17P081G03P081G091F1_084.ab1   307 
  463  C BG607279Ld17P081G03P081G091R1_084.ab1   118 
  475    BG607279Ld17P081G03P081G091F1_084.ab1   331 
  520  C BG607279Ld17P081G03P081G091R1_084.ab1    61 
  536    BG607279Ld17P081G03P081G091F1_084.ab1   392 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0