No. words: 1187; after pruning: 1147


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.9 (1,1:215)  202  0.00 0.93 0.46  BG607279Sn29P116A11P081G091F1_078.ab1        1   216 (372)  C BG607279Sn29P116A11P081G091R1_078.ab1   (382)   217     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1  C BG607279Sn29P116A11P081G091R1_078.ab1   599 
  406    BG607279Sn29P116A11P081G091F1_078.ab1    22 
  410  C BG607279Sn29P116A11P081G091R1_078.ab1   190 
  442    BG607279Sn29P116A11P081G091F1_078.ab1    58 
  446  C BG607279Sn29P116A11P081G091R1_078.ab1   154 
  458    BG607279Sn29P116A11P081G091F1_078.ab1    74 
  466  C BG607279Sn29P116A11P081G091R1_078.ab1   134 
  474    BG607279Sn29P116A11P081G091F1_078.ab1    90 
  490  C BG607279Sn29P116A11P081G091R1_078.ab1   110 
  498    BG607279Sn29P116A11P081G091F1_078.ab1   114 
  502  C BG607279Sn29P116A11P081G091R1_078.ab1    98 
  506    BG607279Sn29P116A11P081G091F1_078.ab1   122 
  550  C BG607279Sn29P116A11P081G091R1_078.ab1    50 
  558    BG607279Sn29P116A11P081G091F1_078.ab1   174 
Contig length: old 971, new 972

Contig length: old 972, new 972
New start: 0 
S Change at: 343; seg lengths: entry 1, contig 1