No. words: 885; after pruning: 819


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.4 (1,1:228)  220  0.00 0.44 0.00  BG607279Sn32P116A11P081G091F1_070.ab1        5   229 (41)  C BG607279Sn32P116A11P081G091R1_070.ab1   (389)   226     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  112 nodes

 58 str. conn. components

Path
    1  C BG607279Sn32P116A11P081G091R1_070.ab1   615 
  407    BG607279Sn32P116A11P081G091F1_070.ab1    21 
  415  C BG607279Sn32P116A11P081G091R1_070.ab1   201 
  423    BG607279Sn32P116A11P081G091F1_070.ab1    37 
  427  C BG607279Sn32P116A11P081G091R1_070.ab1   189 
  431    BG607279Sn32P116A11P081G091F1_070.ab1    45 
  447  C BG607279Sn32P116A11P081G091R1_070.ab1   169 
  455    BG607279Sn32P116A11P081G091F1_070.ab1    69 
  487  C BG607279Sn32P116A11P081G091R1_070.ab1   129 
  495    BG607279Sn32P116A11P081G091F1_070.ab1   109 
  499  C BG607279Sn32P116A11P081G091R1_070.ab1   117 
  503    BG607279Sn32P116A11P081G091F1_070.ab1   117 
Contig length: old 656, new 656

Contig length: old 656, new 656
New start: 0 
S Change at: 296; seg lengths: entry 1, contig 1
S Change at: 319; seg lengths: entry 1, contig 1
S Change at: 324; seg lengths: entry 1, contig 1
S Change at: 331; seg lengths: entry 1, contig 1