No. words: 914; after pruning: 888


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.3 (1,1:289)  270  0.35 0.35 0.35  BG607424Ld05P081A04P081A101F1_043.ab1        4   290 (182)  C BG607424Ld05P081A04P081A101R1_043.ab1   (155)   287     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C BG607424Ld05P081A04P081A101R1_043.ab1   442 
  340    BG607424Ld05P081A04P081A101F1_043.ab1   187 
  348  C BG607424Ld05P081A04P081A101R1_043.ab1    95 
  368    BG607424Ld05P081A04P081A101F1_043.ab1   215 
  376  C BG607424Ld05P081A04P081A101R1_043.ab1    67 
  380    BG607424Ld05P081A04P081A101F1_043.ab1   227 
  384  C BG607424Ld05P081A04P081A101R1_043.ab1    59 
  392    BG607424Ld05P081A04P081A101F1_043.ab1   239 
  396  C BG607424Ld05P081A04P081A101R1_043.ab1    47 
  404    BG607424Ld05P081A04P081A101F1_043.ab1   251 
  408  C BG607424Ld05P081A04P081A101R1_043.ab1    35 
  420    BG607424Ld05P081A04P081A101F1_043.ab1   267 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0