No. words: 1310; after pruning: 1284


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.0 (1,1:496)  450  2.02 0.20 0.20  BG607570Ld06P081B04P081B101F1_078.ab1        1   496 (142)  C BG607570Ld06P081B04P081B101R1_078.ab1   (175)   497     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C BG607570Ld06P081B04P081B101R1_078.ab1   672 
  186    BG607570Ld06P081B04P081B101F1_078.ab1    10 
  392  C BG607570Ld06P081B04P081B101R1_078.ab1   281 
  491    BG607570Ld06P081B04P081B101F1_078.ab1   315 
  503  C BG607570Ld06P081B04P081B101R1_078.ab1   170 
  553    BG607570Ld06P081B04P081B101F1_078.ab1   377 
  557  C BG607570Ld06P081B04P081B101R1_078.ab1   116 
  613    BG607570Ld06P081B04P081B101F1_078.ab1   437 
  617  C BG607570Ld06P081B04P081B101R1_078.ab1    56 
  655    BG607570Ld06P081B04P081B101F1_078.ab1   479 
Contig length: old 813, new 814

Contig length: old 814, new 814
New start: 0