No. words: 1307; after pruning: 1281


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:489)  478  0.00 0.20 0.00  BG607570Ld11P081B04P081B101F1_068.ab1        1   490 (149)  C BG607570Ld11P081B04P081B101R1_068.ab1   (177)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C BG607570Ld11P081B04P081B101R1_068.ab1   668 
  308    BG607570Ld11P081B04P081B101F1_068.ab1   130 
  392  C BG607570Ld11P081B04P081B101R1_068.ab1   277 
  396    BG607570Ld11P081B04P081B101F1_068.ab1   218 
  548  C BG607570Ld11P081B04P081B101R1_068.ab1   121 
  564    BG607570Ld11P081B04P081B101F1_068.ab1   386 
Contig length: old 817, new 817

Contig length: old 817, new 817
New start: 0