No. words: 1018; after pruning: 979


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:280)  274  0.00 0.36 0.00  BM134437Ld07P067A04P067A101F1_030.ab1        1   281 (190)  C BM134437Ld07P067A04P067A101R1_030.ab1   (147)   282     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    
Merge:(0)    3   -3.4 -2.0 (2,1:172)   72 10.19 0.00 0.00  BM134437Ld07P067A04P067A101R1_030.ab1        2   109 (320)  C BM134437Ld07P067A04P067A101F1_014.ab1   (10)   108     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.2 (<20 part: -4.2 (#=12), >20:0.0 (#=0); in HQ: -4.2, out HQ 0.0), match: 2.3  trail: -1.5  total: -3.4   75 10.43 0.00 0.00  BM134437Ld07P067A04P067A101F1_030.ab1      173   287 (184)    BM134437Ld07P067A04P067A101F1_014.ab1        1   115 (3) *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.4       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       2 

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  194 nodes

 91 str. conn. components

Path
    1  C BM134437Ld07P067A04P067A101R1_030.ab1   429 
  285    BM134437Ld07P067A04P067A101F1_030.ab1   137 
Contig length: old 619, new 619

Contig length: old 619, new 619
New start: 0