No. words: 1827; after pruning: 1775


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:279)  269  0.36 0.36 0.00  BM134437Ld08P067A04P067A101F1_012.ab1        1   280 (197)  C BM134437Ld08P067A04P067A101R1_012.ab1   (156)   281     1 *
Merge:(0)    0    0.0 3.8 (1,1:293)  280  0.00 0.34 0.34  BM134437Ld08P067A04P067A101F1_028.ab1        1   294 (175)  C BM134437Ld08P067A04P067A101R1_028.ab1   (150)   294     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  134 nodes

 69 str. conn. components

Path
    1  C BM134437Ld08P067A04P067A101R1_012.ab1   437 
  319    BM134437Ld08P067A04P067A101F1_012.ab1   162 
Contig length: old 634, new 634

Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C BM134437Ld08P067A04P067A101R1_028.ab1   444 
  279    BM134437Ld08P067A04P067A101F1_028.ab1   128 
Contig length: old 619, new 620

Contig length: old 634, new 634
New start: 0 

Contig length: old 620, new 620
New start: 0