No. words: 1841; after pruning: 1789


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:1)  472  0.41 0.00 0.00  BM134437Ld10P067A04P067A101F1_024.ab1        2   483 (0)    BM134437Ld10P067A04P067A101F1_008.ab1        1   482 (0) *
Merge:(0)    0    0.0 9.4 (1,1:8)  420  0.47 0.00 0.00  BM134437Ld10P067A04P067A101R1_024.ab1        9   437 (0)    BM134437Ld10P067A04P067A101R1_008.ab1        1   429 (10) *
Merge:(0)    0    0.0 5.9 (2,2:286)  272  0.70 0.35 0.00  BM134437Ld10P067A04P067A101F1_024.ab1        1   287 (196)  C BM134437Ld10P067A04P067A101R1_024.ab1   (149)   288     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       2 
  1       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  958 nodes

 248 str. conn. components

Path
    1  C BM134437Ld10P067A04P067A101R1_008.ab1   439 
   14  C BM134437Ld10P067A04P067A101R1_024.ab1   434 
   18  C BM134437Ld10P067A04P067A101R1_008.ab1   422 
   30  C BM134437Ld10P067A04P067A101R1_024.ab1   418 
   42  C BM134437Ld10P067A04P067A101R1_008.ab1   398 
   46  C BM134437Ld10P067A04P067A101R1_024.ab1   402 
   62  C BM134437Ld10P067A04P067A101R1_008.ab1   378 
   66  C BM134437Ld10P067A04P067A101R1_024.ab1   382 
   70  C BM134437Ld10P067A04P067A101R1_008.ab1   370 
   74  C BM134437Ld10P067A04P067A101R1_024.ab1   374 
  118  C BM134437Ld10P067A04P067A101R1_008.ab1   322 
  122  C BM134437Ld10P067A04P067A101R1_024.ab1   326 
  126  C BM134437Ld10P067A04P067A101R1_008.ab1   314 
  142  C BM134437Ld10P067A04P067A101R1_024.ab1   306 
  158  C BM134437Ld10P067A04P067A101R1_008.ab1   282 
  163  C BM134437Ld10P067A04P067A101R1_024.ab1   285 
  174  C BM134437Ld10P067A04P067A101R1_008.ab1   266 
  178  C BM134437Ld10P067A04P067A101R1_024.ab1   270 
  182  C BM134437Ld10P067A04P067A101R1_008.ab1   258 
  193  C BM134437Ld10P067A04P067A101R1_024.ab1   255 
  202  C BM134437Ld10P067A04P067A101R1_008.ab1   238 
  210  C BM134437Ld10P067A04P067A101R1_024.ab1   238 
  214    BM134437Ld10P067A04P067A101F1_024.ab1    54 
  218  C BM134437Ld10P067A04P067A101R1_008.ab1   222 
  230    BM134437Ld10P067A04P067A101F1_008.ab1    69 
  234    BM134437Ld10P067A04P067A101F1_024.ab1    74 
  238  C BM134437Ld10P067A04P067A101R1_008.ab1   202 
  254    BM134437Ld10P067A04P067A101F1_008.ab1    93 
  258    BM134437Ld10P067A04P067A101F1_024.ab1    98 
  630    BM134437Ld10P067A04P067A101F1_008.ab1   469 
Contig length: old 643, new 643

Contig length: old 643, new 643
New start: 0