No. words: 448; after pruning: 422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.6 -0.6 (1,1:103)   88  0.00 0.00 2.86  BM134437Ta13P067A04P108E111F1_003.ab1        1   105 (55)  C BM134437Ta13P067A04P108E111R1_003.ab1   (186)   102     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C BM134437Ta13P067A04P108E111R1_003.ab1   288 
  230    BM134437Ta13P067A04P108E111F1_003.ab1    44 
  234  C BM134437Ta13P067A04P108E111R1_003.ab1    55 
  254    BM134437Ta13P067A04P108E111F1_003.ab1    68 
Contig length: old 344, new 346

Contig length: old 346, new 346
New start: 0