No. words: 1076; after pruning: 1050


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.6 (1,1:500)  478  0.00 0.20 0.00  BM134469As02P027D05P027D111F1_041.ab1        1   497 (46)  C BM134469As02P027D05P027D111R1_041.ab1   (31)   502     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C BM134469As02P027D05P027D111R1_041.ab1   533 
  157    BM134469As02P027D05P027D111F1_041.ab1   125 
  193  C BM134469As02P027D05P027D111R1_041.ab1   341 
  257    BM134469As02P027D05P027D111F1_041.ab1   225 
  261  C BM134469As02P027D05P027D111R1_041.ab1   273 
  401    BM134469As02P027D05P027D111F1_041.ab1   369 
  405  C BM134469As02P027D05P027D111R1_041.ab1   129 
  513    BM134469As02P027D05P027D111F1_041.ab1   481 
  517  C BM134469As02P027D05P027D111R1_041.ab1    17 
  521    BM134469As02P027D05P027D111F1_041.ab1   489 
Contig length: old 575, new 575

Contig length: old 575, new 575
New start: 0