No. words: 1082; after pruning: 1056


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.3 (1,1:497)  469  0.00 0.41 0.00  BM134469At02P027D05P027D111F1_037.ab1        1   493 (57)  C BM134469At02P027D05P027D111R1_037.ab1   (33)   499     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BM134469At02P027D05P027D111R1_037.ab1   532 
  157    BM134469At02P027D05P027D111F1_037.ab1   122 
  185  C BM134469At02P027D05P027D111R1_037.ab1   348 
  237    BM134469At02P027D05P027D111F1_037.ab1   202 
  241  C BM134469At02P027D05P027D111R1_037.ab1   292 
  433    BM134469At02P027D05P027D111F1_037.ab1   398 
  437  C BM134469At02P027D05P027D111R1_037.ab1    96 
  497    BM134469At02P027D05P027D111F1_037.ab1   462 
  501  C BM134469At02P027D05P027D111R1_037.ab1    32 
  509    BM134469At02P027D05P027D111F1_037.ab1   474 
Contig length: old 584, new 585

Contig length: old 585, new 585
New start: 0