No. words: 1325; after pruning: 1299


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:485)  454  0.62 0.21 0.00  BM134469Ld03P027D05P027D111F1_048.ab1        1   486 (189)  C BM134469Ld03P027D05P027D111R1_048.ab1   (163)   487     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BM134469Ld03P027D05P027D111R1_048.ab1   650 
  376    BM134469Ld03P027D05P027D111F1_048.ab1   212 
  412  C BM134469Ld03P027D05P027D111R1_048.ab1   239 
  504    BM134469Ld03P027D05P027D111F1_048.ab1   340 
  508  C BM134469Ld03P027D05P027D111R1_048.ab1   143 
  544    BM134469Ld03P027D05P027D111F1_048.ab1   380 
  556  C BM134469Ld03P027D05P027D111R1_048.ab1    95 
  568    BM134469Ld03P027D05P027D111F1_048.ab1   404 
  580  C BM134469Ld03P027D05P027D111R1_048.ab1    71 
  584    BM134469Ld03P027D05P027D111F1_048.ab1   420 
  592  C BM134469Ld03P027D05P027D111R1_048.ab1    59 
  600    BM134469Ld03P027D05P027D111F1_048.ab1   436 
Contig length: old 839, new 839

Contig length: old 839, new 839
New start: 0