No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.7 (1,1:486)  462  0.00 0.21 0.00  BM134469Ld04P027D05P027D111F1_046.ab1        1   483 (189)  C BM134469Ld04P027D05P027D111R1_046.ab1   (161)   488     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BM134469Ld04P027D05P027D111R1_046.ab1   649 
  273    BM134469Ld04P027D05P027D111F1_046.ab1   111 
  305  C BM134469Ld04P027D05P027D111R1_046.ab1   345 
  353    BM134469Ld04P027D05P027D111F1_046.ab1   191 
  457  C BM134469Ld04P027D05P027D111R1_046.ab1   193 
  501    BM134469Ld04P027D05P027D111F1_046.ab1   339 
  517  C BM134469Ld04P027D05P027D111R1_046.ab1   133 
  553    BM134469Ld04P027D05P027D111F1_046.ab1   391 
  561  C BM134469Ld04P027D05P027D111R1_046.ab1    89 
  565    BM134469Ld04P027D05P027D111F1_046.ab1   403 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0