No. words: 1301; after pruning: 1275


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:478)  446  0.84 0.21 0.00  BM134469Ld05P027D05P027D111F1_044.ab1        1   479 (180)  C BM134469Ld05P027D05P027D111R1_044.ab1   (162)   480     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C BM134469Ld05P027D05P027D111R1_044.ab1   642 
  256    BM134469Ld05P027D05P027D111F1_044.ab1    93 
  264  C BM134469Ld05P027D05P027D111R1_044.ab1   379 
  356    BM134469Ld05P027D05P027D111F1_044.ab1   193 
  388  C BM134469Ld05P027D05P027D111R1_044.ab1   255 
  428    BM134469Ld05P027D05P027D111F1_044.ab1   265 
  444  C BM134469Ld05P027D05P027D111R1_044.ab1   199 
  496    BM134469Ld05P027D05P027D111F1_044.ab1   333 
  508  C BM134469Ld05P027D05P027D111R1_044.ab1   135 
  512    BM134469Ld05P027D05P027D111F1_044.ab1   349 
  516  C BM134469Ld05P027D05P027D111R1_044.ab1   127 
  540    BM134469Ld05P027D05P027D111F1_044.ab1   377 
  556  C BM134469Ld05P027D05P027D111R1_044.ab1    87 
  564    BM134469Ld05P027D05P027D111F1_044.ab1   401 
Contig length: old 822, new 822

Contig length: old 822, new 822
New start: 0