No. words: 1304; after pruning: 1278


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.6 (1,1:481)  452  0.42 0.21 0.00  BM134469Ld06P027D05P027D111F1_042.ab1        1   480 (194)  C BM134469Ld06P027D05P027D111R1_042.ab1   (148)   482     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BM134469Ld06P027D05P027D111R1_042.ab1   630 
  361    BM134469Ld06P027D05P027D111F1_042.ab1   213 
  397  C BM134469Ld06P027D05P027D111R1_042.ab1   234 
  473    BM134469Ld06P027D05P027D111F1_042.ab1   325 
  505  C BM134469Ld06P027D05P027D111R1_042.ab1   126 
  521    BM134469Ld06P027D05P027D111F1_042.ab1   373 
  533  C BM134469Ld06P027D05P027D111R1_042.ab1    98 
  541    BM134469Ld06P027D05P027D111F1_042.ab1   393 
  561  C BM134469Ld06P027D05P027D111R1_042.ab1    70 
  569    BM134469Ld06P027D05P027D111F1_042.ab1   421 
  573  C BM134469Ld06P027D05P027D111R1_042.ab1    58 
  585    BM134469Ld06P027D05P027D111F1_042.ab1   437 
Contig length: old 822, new 822

Contig length: old 822, new 822
New start: 0