No. words: 1318; after pruning: 1292


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:484)  461  0.41 0.00 0.00  BM134469Ld08P027D05P027D111F1_038.ab1        1   485 (187)  C BM134469Ld08P027D05P027D111R1_038.ab1   (161)   485     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BM134469Ld08P027D05P027D111R1_038.ab1   646 
  362    BM134469Ld08P027D05P027D111F1_038.ab1   201 
  390  C BM134469Ld08P027D05P027D111R1_038.ab1   257 
  510    BM134469Ld08P027D05P027D111F1_038.ab1   349 
  518  C BM134469Ld08P027D05P027D111R1_038.ab1   129 
  538    BM134469Ld08P027D05P027D111F1_038.ab1   377 
  542  C BM134469Ld08P027D05P027D111R1_038.ab1   105 
  554    BM134469Ld08P027D05P027D111F1_038.ab1   393 
  562  C BM134469Ld08P027D05P027D111R1_038.ab1    85 
  566    BM134469Ld08P027D05P027D111F1_038.ab1   405 
  578  C BM134469Ld08P027D05P027D111R1_038.ab1    69 
  594    BM134469Ld08P027D05P027D111F1_038.ab1   433 
Contig length: old 833, new 833

Contig length: old 833, new 833
New start: 0