No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.5 (1,1:460)  424  0.87 0.22 0.22  BM134469Ld09P027D05P027D111F1_036.ab1        1   460 (10)  C BM134469Ld09P027D05P027D111R1_036.ab1   (176)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C BM134469Ld09P027D05P027D111R1_036.ab1   636 
  273    BM134469Ld09P027D05P027D111F1_036.ab1    97 
  293  C BM134469Ld09P027D05P027D111R1_036.ab1   344 
  441    BM134469Ld09P027D05P027D111F1_036.ab1   265 
  445  C BM134469Ld09P027D05P027D111R1_036.ab1   192 
  457    BM134469Ld09P027D05P027D111F1_036.ab1   281 
  461  C BM134469Ld09P027D05P027D111R1_036.ab1   176 
  590    BM134469Ld09P027D05P027D111F1_036.ab1   414 
  611  C BM134469Ld09P027D05P027D111R1_036.ab1    26 
  615    BM134469Ld09P027D05P027D111F1_036.ab1   439 
  623  C BM134469Ld09P027D05P027D111R1_036.ab1    14 
  627    BM134469Ld09P027D05P027D111F1_036.ab1   451 
Contig length: old 645, new 646

Contig length: old 646, new 646
New start: 0