No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:341)  327  0.00 0.29 0.29  BM134520Ld05P003A01P003A071F1_093.ab1        1   342 (156)  C BM134520Ld05P003A01P003A071R1_093.ab1   (167)   342     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C BM134520Ld05P003A01P003A071R1_093.ab1   509 
  263    BM134520Ld05P003A01P003A071F1_093.ab1    95 
  267  C BM134520Ld05P003A01P003A071R1_093.ab1   243 
  311    BM134520Ld05P003A01P003A071F1_093.ab1   143 
  319  C BM134520Ld05P003A01P003A071R1_093.ab1   191 
  331    BM134520Ld05P003A01P003A071F1_093.ab1   163 
  347  C BM134520Ld05P003A01P003A071R1_093.ab1   163 
  395    BM134520Ld05P003A01P003A071F1_093.ab1   227 
  403  C BM134520Ld05P003A01P003A071R1_093.ab1   107 
  415    BM134520Ld05P003A01P003A071F1_093.ab1   247 
Contig length: old 665, new 666

Contig length: old 666, new 666
New start: 0