No. words: 655; after pruning: 629


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   38   -4.6 -4.6 (1,1:283)  197  4.58 0.42 0.00  BM134520Ld11P003A01P003A071F1_096.ab1        7   246 (130)  C BM134520Ld11P003A01P003A071R1_096.ab1   (0)   279    39 *
  Worst pair: offset 1 
LLR breakdown: discreps: -5.5 (<20 part: -5.5 (#=12), >20:0.0 (#=0); in HQ: -5.5, out HQ 0.0), match: 5.1  trail: -4.3  total: -4.7  197  4.58 0.42 0.00  BM134520Ld11P003A01P003A071F1_096.ab1        7   246 (130)  C BM134520Ld11P003A01P003A071R1_096.ab1   (0)   279    39 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.6       1        0

Gap   # merges  # failures
 size
38       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1    BM134520Ld11P003A01P003A071F1_096.ab1     1 
Contig length: old 376, new 376

Contig length: old 376, new 376
New start: 0