No. words: 1255; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -648  -580  0 25    487     E -486- 0
Fail: (1)  487   -3.9 -3.9 (1,1:580)   59 10.64 0.00 0.00  BM134557Ld20P067F03P067F091F1_093.ab1        1    94 (512)  C BM134557Ld20P067F03P067F091R1_093.ab1   (68)   581   488 *
  Worst pair: offset 0 
LLR breakdown: discreps: -3.0 (<20 part: -3.0 (#=10), >20:0.0 (#=0); in HQ: -3.0, out HQ 0.0), match: 1.9  trail: -2.8  total: -3.9   59 10.64 0.00 0.00  BM134557Ld20P067F03P067F091F1_093.ab1        1    94 (512)  C BM134557Ld20P067F03P067F091R1_093.ab1   (68)   581   488 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.9       0        1

Gap   # merges  # failures
 size
487       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ld20P067F03P067F091R1_093.ab1     1 
Contig length: old 649, new 649

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ld20P067F03P067F091F1_093.ab1     1 
Contig length: old 606, new 606