No. words: 1050; after pruning: 1024


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -534  -477  0 37    377     S -477- -439, E -376- 0
Fail: (1)  377   -4.7 -4.7 (1,1:477)   49  1.61 0.00 0.00  BM134557Sn24P067F03P137D101F1_026.ab1       40   101 (414)  C BM134557Sn24P067F03P137D101R1_026.ab1   (96)   439   378 *
  Worst pair: offset 0 
LLR breakdown: discreps: -2.2 (<20 part: 0.0 (#=0), >20:-2.2 (#=1); in HQ: -2.2, out HQ 0.0), match: 1.4  trail: -1.8  lead: -2.1  total: -4.7   49  1.61 0.00 0.00  BM134557Sn24P067F03P137D101F1_026.ab1       40   101 (414)  C BM134557Sn24P067F03P137D101R1_026.ab1   (96)   439   378 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.7       0        1

Gap   # merges  # failures
 size
377       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn24P067F03P137D101R1_026.ab1     1 
Contig length: old 535, new 535

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn24P067F03P137D101F1_026.ab1     1 
Contig length: old 515, new 515