No. words: 1461; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:601)  594  0.00 0.00 0.00  BM134557Sn25P067F03P101G121F1_066.ab1        1   602 (37)  C BM134557Sn25P067F03P101G121R1_066.ab1   (43)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    5   -1.8 -1.8 (2,1:6)  125  5.81 0.58 0.58  BM134557Sn25P067F03P101G121R1_066.ab1      426   597 (48)  C BM134557Sn25P067F03P101G121F1_083.ab1   (5)   172     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.8       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       2 

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  424 nodes

 182 str. conn. components

Path
    1  C BM134557Sn25P067F03P101G121R1_066.ab1   645 
   60    BM134557Sn25P067F03P101G121F1_083.ab1    12 
   64  C BM134557Sn25P067F03P101G121R1_066.ab1   582 
  106    BM134557Sn25P067F03P101G121F1_066.ab1    63 
  111  C BM134557Sn25P067F03P101G121R1_066.ab1   535 
  547    BM134557Sn25P067F03P101G121F1_066.ab1   504 
  563  C BM134557Sn25P067F03P101G121R1_066.ab1    83 
  615    BM134557Sn25P067F03P101G121F1_066.ab1   572 
  623  C BM134557Sn25P067F03P101G121R1_066.ab1    23 
  631    BM134557Sn25P067F03P101G121F1_066.ab1   588 
Contig length: old 682, new 682

Contig length: old 682, new 682
New start: 0