No. words: 1410; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:596)  588  0.00 0.00 0.00  BM134557Sn26P067F03P101G121F1_084.ab1        1   597 (44)  C BM134557Sn26P067F03P101G121R1_084.ab1   (44)   597     1 *
Merge:(0)    0    0.0 2.4 (2,1:50)  112  2.34 0.00 0.00  BM134557Sn26P067F03P101G121R1_084.ab1      420   547 (94)  C BM134557Sn26P067F03P101G121F1_096.ab1   (0)   128     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  398 nodes

 173 str. conn. components

Path
    1  C BM134557Sn26P067F03P101G121R1_084.ab1   641 
   64    BM134557Sn26P067F03P101G121F1_084.ab1    20 
   68  C BM134557Sn26P067F03P101G121R1_084.ab1   574 
   80    BM134557Sn26P067F03P101G121F1_084.ab1    36 
   84  C BM134557Sn26P067F03P101G121R1_084.ab1   558 
   88    BM134557Sn26P067F03P101G121F1_084.ab1    44 
   92  C BM134557Sn26P067F03P101G121R1_084.ab1   550 
  104    BM134557Sn26P067F03P101G121F1_084.ab1    60 
  116  C BM134557Sn26P067F03P101G121R1_084.ab1   526 
  552    BM134557Sn26P067F03P101G121F1_084.ab1   508 
  560  C BM134557Sn26P067F03P101G121R1_084.ab1    82 
  620    BM134557Sn26P067F03P101G121F1_084.ab1   576 
  624  C BM134557Sn26P067F03P101G121R1_084.ab1    18 
  628    BM134557Sn26P067F03P101G121F1_084.ab1   584 
Contig length: old 685, new 685

Contig length: old 685, new 685
New start: 0