No. words: 1044; after pruning: 1018


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -529  -475  0 38    374     S -475- -435, E -373- 0
Fail: (1)  374   -3.0 -3.0 (1,1:475)   46  1.64 0.00 0.00  BM134557Sn26P067F03P137D101F1_024.ab1       42   102 (412)  C BM134557Sn26P067F03P137D101R1_024.ab1   (95)   435   375 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.0       0        1

Gap   # merges  # failures
 size
374       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn26P067F03P137D101R1_024.ab1     1 
Contig length: old 530, new 530

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn26P067F03P137D101F1_024.ab1     1 
Contig length: old 514, new 514