No. words: 1406; after pruning: 1367


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.8 (1,1:603)  584  0.00 0.17 0.17  BM134557Sn29P067F03P101G121F1_094.ab1        4   604 (44)  C BM134557Sn29P067F03P101G121R1_094.ab1   (41)   601     1 *
Merge:(0)    0    0.0 2.3 (2,1:55)  104  1.72 0.00 0.00  BM134557Sn29P067F03P101G121R1_094.ab1      434   549 (93)  C BM134557Sn29P067F03P101G121F1_090.ab1   (0)   116     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  392 nodes

 158 str. conn. components

Path
    1  C BM134557Sn29P067F03P101G121R1_094.ab1   642 
   65    BM134557Sn29P067F03P101G121F1_094.ab1    26 
   69  C BM134557Sn29P067F03P101G121R1_094.ab1   574 
   77    BM134557Sn29P067F03P101G121F1_094.ab1    38 
   81  C BM134557Sn29P067F03P101G121R1_094.ab1   562 
   89    BM134557Sn29P067F03P101G121F1_094.ab1    50 
   93  C BM134557Sn29P067F03P101G121R1_094.ab1   550 
  425    BM134557Sn29P067F03P101G121F1_094.ab1   386 
  429  C BM134557Sn29P067F03P101G121R1_094.ab1   214 
  549    BM134557Sn29P067F03P101G121F1_094.ab1   510 
  565  C BM134557Sn29P067F03P101G121R1_094.ab1    78 
  609    BM134557Sn29P067F03P101G121F1_094.ab1   570 
  624  C BM134557Sn29P067F03P101G121R1_094.ab1    20 
  632    BM134557Sn29P067F03P101G121F1_094.ab1   593 
Contig length: old 686, new 687

Contig length: old 687, new 687
New start: 0