No. words: 1044; after pruning: 1018


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -531  -473  0 38    369     S -473- -436, E -368- 0
Fail: (1)  369   -4.3 -4.3 (1,1:473)   52  4.48 0.00 0.00  BM134557Sn30P067F03P137D101F1_020.ab1       39   105 (407)  C BM134557Sn30P067F03P137D101R1_020.ab1   (96)   436   370 *
  Worst pair: offset 0 
LLR breakdown: discreps: -1.5 (<20 part: -1.5 (#=3), >20:0.0 (#=0); in HQ: -1.5, out HQ 0.0), match: 1.4  trail: -2.2  lead: -2.1  total: -4.4   52  4.48 0.00 0.00  BM134557Sn30P067F03P137D101F1_020.ab1       39   105 (407)  C BM134557Sn30P067F03P137D101R1_020.ab1   (96)   436   370 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.3       0        1

Gap   # merges  # failures
 size
369       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn30P067F03P137D101R1_020.ab1     1 
Contig length: old 532, new 532

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn30P067F03P137D101F1_020.ab1     1 
Contig length: old 512, new 512