No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -531  -475  0 47    376     S -475- -436, E -375- 0
Fail: (1)  376   -4.5 -4.5 (1,1:475)   47  1.67 0.00 0.00  BM134557Sn31P067F03P137D101F1_017.ab1       41   100 (423)  C BM134557Sn31P067F03P137D101R1_017.ab1   (96)   436   377 *
  Worst pair: offset 0 
LLR breakdown: discreps: -1.6 (<20 part: -1.6 (#=1), >20:0.0 (#=0); in HQ: -1.6, out HQ 0.0), match: 1.3  trail: -2.3  lead: -2.0  total: -4.6   47  1.67 0.00 0.00  BM134557Sn31P067F03P137D101F1_017.ab1       41   100 (423)  C BM134557Sn31P067F03P137D101R1_017.ab1   (96)   436   377 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.5       0        1

Gap   # merges  # failures
 size
376       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn31P067F03P137D101R1_017.ab1     1 
Contig length: old 532, new 532

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Sn31P067F03P137D101F1_017.ab1     1 
Contig length: old 523, new 523